Sunil S. Bhagwat Director IISER Pune
Shankhajit Mondal Department of Chemistry IISER Pune
Muskan Parmar Department of Chemistry IISER Pune
Sandanaraj Britto Department of Chemistry IISER Pune
Dipanjan Majumder Department of Chemistry IISER Pune
Ankit Dhankhar Department of Chemistry IISER Pune
Nishant Singh Institute of Advanced Materials (INAM) Universitat Jaume Spain
Muhammed Musthafa Department of Chemistry IISER Pune
Virendra Mahida Department of Chemistry IISER Pune
Rahul Deb Department of Chemistry IISER Pune
Taniya Dutta Department of Chemistry IISER Pune
Onkar Bankar Department of Chemistry IISER Pune
Niranjan Patel Department of Chemistry IISER Pune
S.G. Srivatsan Department of Chemistry IISER Pune
Ankita Chandra Department of Chemistry IISER Pune
Sandip Toraskar Department of Chemistry IISER Pune
Shabana Khan Department of Chemistry IISER Pune
Arindam Pal Department of Chemistry IISER Pune
Urmila Makhija Department of Chemistry IISER Pune
Madan Ambhore Yeshwant Mahavidyalaya Nanded
Pinaki Talukdar Department of Chemistry IISER Pune
Swagata Dutta Department of Chemistry IISER Pune
Piyush Singh Department of Chemistry IISER Pune
Prasenjit Ghosh Department of Chemistry IISER Pune
Jeetender Chugh Department of Chemistry IISER Pune
Srijita Banerjee Department of Chemistry IISER Pune
Rahul Mendhe Department of Chemistry IISER Pune
Gokul S Londhe Department of Chemistry IISER Pune
Soumya Sahoo Department of Chemistry IISER Pune
Rahul Hooda Department of Chemistry IISER Pune
Preeti Kumari Department of Chemistry IISER Pune
Pramod Pillai Department of Chemistry IISER Pune
Sunil S. Bhagwat Professor, Director IISER Pune
A chemical engineer by training, Prof. Sunil Bhagwat was a faculty member at ICT Mumbai for about 35 years. Prof. Bhagwat's research is in the areas of interfacial science and engineering, energy and exergy engineering, computer process simulation, and artificial neural networks. He is passionate about teaching and was elected as the best teacher by students over ten times so far. In 2013, his research group won the first prize in the Bry-Air Asia awards for the HVAC for his work in the area of heat-based refrigeration. He was awarded NOCIL Award of the Indian Institute of Chemical Engineers for Excellence in Design or Development of Process Plant or Equipment in 2012 and the CSMCRI-Chemcon Distinguished Speaker Award at Chemcon Dec 2014. In 2016, the Indian National Science Academy (INSA) bestowed upon him the Best Teacher Award for the year 2016. In 2019, he was selected for the UDCT Alumni Association's Distinguished Alumnus Award-Academic category. Prof. Bhagwat is an active consultant to a wide range of companies in the chemical industry. He has guided over seventy masters theses, over forty doctoral theses, has more than 100 international publications and over eighty national/ international conference presentations and ten national and international patents to his credit.
Prasenjit Ghosh Professor, Department of Chemistry IISER Pune
Prof. Prasenjit Ghosh obtained his PhD in Computational Material Science in 2007 from the Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore under the guidance of Prof Shobhana Narasimhan and Umesh V. Waghmare. He was a postdoctoral research fellow at the Condensed Matter and Statistical Physics Section of The Abdus Salam International Centre for Theoretical Physics from September 2007 to August 2010 before joining IISER Pune in September 2010.
Shabana Khan Professor, Department of Chemistry IISER Pune
Prof. Shabana Khan obtained her PhD degree from the Indian Institute of Technology, Delhi in 2008. Subsequently, she received the fellowship of Deutscher Akademischer Austausch Dienst (DAAD) and joined the research group of Prof. Herbert W. Roesky as a postdoctoral fellow at University of Goettingen, followed by a second post doc with Prof. Manuel Alcarazo at the Max Planck Institute for Coal Research. Currently she is working as an associate professor in the Department of Chemistry at IISER Pune.
Transporting ions through lipid-based membranes is a key biophysical activity existing in living organisms, which is highly significant for cellular communication, balance and energy expenditure. Recently developed light-activated systems have created new horizons for for controlling ion movement with spatial and temporal precision. This presentation explores the development of Photoport, a light-responsive platform designed to efficiently facilitate ion transport across lipid bilayers. By utilizing photoisomerization and photocleavage based processes, Photoport enables precise control over artificial ion transporters, mimicking natural processes while offering tunable external triggers. The molecular designs of different phototransporters shall be discussed, and it will include such aspects such as photoreversible ion gating and selective ion permeability. The effect of the light-mediated structural changes on transport properties will be treated in great detail. Applications of Photoport in membrane systems, such as cancer targeting, will also be discussed.
Pinaki Talukdar Professor, Department of Chemistry IISER Pune
Prof Pinaki Talukdar completed B.Sc. in Chemistry from the University of Calcutta (1998), an M.S. from the Indian Institute of Science, Bangalore (2001), and a Ph.D. in Organic Chemistry from the University of Geneva, Switzerland (2001-2005). After completing a Postdoc from the University of Illinois at Urbana Champaign, USA (2005-2006), he worked as a Senior Research Scientist at AMRI Global (Presently Curia Global), Hyderabad (2006-2007) and then at the Institute of Life Sciences (Presently Dr. Reddy's Institute of Life Sciences), Hyderabad (2007-2009). He joined the Chemistry Department at IISER Pune as an Assistant Professor in 2009. He was re-appointed as Associate Professor in 2015 and Professor in 2020. He is also serving as the Dean of Faculty at IISER Pune.
Jeetender Chugh Professor, Department of Chemistry IISER Pune
Prof. Jeetender Chugh obtained his Ph.D. in Biomolecular NMR spectroscopy in 2008 from TIFR, Mumbai. He was a postdoctoral fellow at the University of Michigan before joining IISER Pune in 2013. His lab focuses on various aspects of solution NMR spectroscopy, including theoretical design and implementation of new NMR experiments to probe the biophysical characteristics and conformational dynamics of RNAs, proteins, and RNA-protein complexes. In parallel, he is also interested in looking at metabolic profiles of various body fluids (urine, blood, saliva, etc.) in normal and disease conditions and cell extracts under various stressed conditions to understand and correlate the metabolic pathways with specific phenotypes.
DNA and RNA polymerases and nucleotide transferases are widely used in introducing functionalities that aid in the structural and functional analysis of nucleic acids. This process greatly relies on the ability of native and engineered enzymes to incorporate functionalized nucleotides into oligonucleotides. While polymerases can process a wide variety of structurally diverse nucleotide substrates, currently available data does not provide an adequate understanding of the underlying mechanism that enables the enzyme to accept such unnatural nucleotides. For a decade now, we have been developing microenvironment- sensitive nucleoside/nucleotide analogs that help in probing the structure and ligand binding properties of therapeutically relevant nucleic acid motifs. We have leveraged the microenvironment sensitivity of C5-heterocycle-modified dUTP substrates to probe the incorporation mechanism and chemical space tolerance of DNA polymerases. In this presentation, I will describe the development of a probe platform using our dual-functional nucleotide probes to study the polymerase activity in real time and at the atomic level by using a combination of fluorescence, 19F NMR and X-ray crystallography techniques. The findings from our studies further expand the limited knowledge on the interplay between the polymerases and chemically diverse substrates, and build a basis for developing nucleotide probes for advanced applications.
S.G. Srivatsan Professor, Department of Chemistry IISER Pune
Prof. S.G. Srivatsan obtained his M. Sc. degree in chemistry from Indian Institute of Technology, Madras in 1995 and PhD in bioorganic chemistry from Indian Institute of Technology, Kanpur in 2003. He was an Alexander von Humboldt postdoctoral fellow at University of Bonn, Germany and a postdoctoral fellow at University of California, San Diego before joining IISER Pune in November 2008.
Pramod Pillai Professor, Department of Chemistry IISER Pune
Prof. Pramod Pillai obtained his PhD in Chemistry in 2008 under the supervision of Prof. K. George Thomas at National Institute for Interdisciplinary Science and Technology (NIIST) Trivandrum, India. Prior to joining IISER Pune in June 2014, Prof. Pillai was a postdoctoral fellow in the group of Prof. Bartosz A. Grzybowski at Northwestern University, Evanston, USA (2011-2014), and an Alexander von Humboldt postdoctoral Fellow at Technische Universität in Dortmund, Germany with Prof. Christof M. Niemeyer (2008-2010). Currently Prof. Pillai's research at IISER Pune is focused on controlling the interplay of forces to improve and impart newer properties at the nanoscale. Some of the properties of interest includes light harvesting, catalysis and self-assembly in hybrid nanomaterials.
Ramakrishna G. Bhat Professor, Department of Chemistry IISER Pune
Prof. Ramakrishna G. Bhat earned a Ph.D. in Organic Chemistry from the Indian Institute of Science (IISc), Bangalore, in July 2004, where he specialized in synthetic organic chemistry and peptide synthesis under the supervision of Prof. S. Chandrasekaran. His research career has included various roles, starting as a postdoctoral fellow at Simon Fraser University, British Columbia, Canada, from 2004 to 2006, where he worked with Prof. B. M. Pinto. In May 2007, Prof. Bhat began his tenure as an Assistant Professor, a position he held until January 2013, when he was promoted to Associate Professor. Since October 2019, he is working as a Professor.
Sandanaraj Britto Professor, Department of Chemistry IISER Pune
Prof. Sandanaraj Britto obtained PhD at the University of Massachusetts-Amherst (2002-2007). He was a Presidential Postdoctoral Fellow until 2010 at the Global Imaging Group of Novartis Institutes for BioMedical Research, Inc at Cambridge, Massachusetts, USA. He worked as Senior Scientist in RNAi Therapeutics at Novartis until 2014 before joining IISER Pune
Muhammed Musthafa Professor, Department of Chemistry IISER Pune
Prof. Muhammed Musthafa obtained his PhD degree from the Indian Institute of Science, Bangalore (India) where he explored bi-functional mechanism and metal-support interactions in fuel cell electrocatalysis by electrochemical FTIR. Then he moved to the University of St: Andrews, Scotland (United Kingdom) where he mainly investigated the stability of cathode materials in aprotic Li-air batteries by differential electrochemical mass spectrometric (DEMS) techniques. He joined the department of chemistry of IISER Pune in August 2014 as an Assistant Professor.
Nishant Singh Professor, Institute of Advanced Materials (INAM) Universitat Jaume Spain
Nishant completed his PhD in 2016 under the supervision of Pr. Escuder with a Marie Curie Fellowship (Extraordinary prize) working on catalytic hydrogels. He then moved to the School of Pharmacy, University of Nottingham, UK with Pr. C. Alexander for his first postdoc in 2017 on EPSRC funded Next Generation Biomaterials Discovery Grant. He worked on combinatorial drug delivery systems for breast cancer and antibiotic resistance, and high-through put discovery of anti-bacterial coatings. He then moved to Institut de Science et d'Ingénierie Supramoléculaires (ISIS), University of Strasbourg in 2018 with Pr. T. Hermans to work on non-equilibrium self-assemblies and reaction cycles where he also secured a Marie Curie Individual Fellowship. Nishant was awarded CIDEGENT GRANT in 2022 to start his own research group at INAM,UJI. He is mainly interested in supramolecular and systems chemistry with focus on non-equilibrium systems.
Madan Ambhore Assistant Professor, Yeshwant Mahavidyalaya Nanded
Doping metal ions into halide double perovskites introduces intriguing optical and optoelectronic properties. However, the double perovskites undergo structural phase transitions under varying temperature and pressure, raising questions about how such transitions affect the dopant's optoelectronic behavior. Also, can the dopants alter the phase transition behavior? Here we address these questions, with the example of Mn2+-doped Cs2NaBiCl6 double perovskite.1 Both the undoped and Mn2+-doped Cs2NaBiCl6 show a similar structural phase transition below 110 K. The samples remain in cubic phase between 300-110 K, transitioning to a tetragonal phase between 100-15 K. Importantly, this phase transition of the host does not influence the photoluminescence (PL) arising from Mn2+ d-d transitions. Similarly, electron paramagnetic resonance (EPR) spectra of Mn2+ dopants remain unchanged across the phase transition temperature. Both the PL and EPR data suggest that the local structure around Mn2+ dopant remains unchanged, ensuring a stable light emission, regardless of the transition of global structure of the host. These results suggest that the global structural phase transition of the host does not to influence the local structure and emission property of the dopant Mn2+ ion. The stability of dopant emission regardless of the structural phase transition bodes well for their potential applications in phosphor converted light emitting diodes.
Srijita Banerjee PhD Student, Department of Chemistry IISER Pune
Srijita Banerjee completed BSc from Serampore College University of Calcutta. She joined Prof. Angshuman Nag's group at IISER Pune in 2019 as a Int.PhD student. Her broad research interests are exploring the opto-structural properties of halide perovskites.
Heparan sulfate (HS) are heterogenous polysaccharide that contributes to diverse biological processes. However, the synthetic challenges, selective protein binding and stability within biological systems impede medical applications of native HS ligands. In contrast, HS mimetics have emerged as a powerful tool in drug discovery. Herein, we present the design and synthesis of the first series of HS mimetics composed of fluorine atom at the C3 position of the glucuronic acid residue, aimed at modulating structure-activity relationships. The 19F-NMR confirmed that fluorine peaks are high sensitive to the sulfation patterns and maintained the 4C1 conformation in glucuronic acid. While, the microarray analysis, followed by SPR studies confirmed a single site substitution (OH to F) in HS drastically improve the N-acetate HS sequence binding affinity towards growth factors and chemokines. To our surprise, GlcNAc6S-GlcA(3F) and GlcuNS6S3S-GlcA(3F) showed remarkable strong binding to various growth factors and chemokines similar to highly sulfate N-sulfate native HS ligands. Further, these binding also regulate growth factors mediated fibroblast cells proliferation, demonstrating the importance of F-substitution in HS to modulate its activity
Virendra Mahida PhD Student, Department of Chemistry IISER Pune
graduation :- VP & RPTP science college (Sardar Patel University, ANAND, GUJARAT) post graduation :- Department of chemistry(Sardar Patel University, ANAND, GUJARAT) research interest :- carbohydrate chemistry & glycobiology
Background: The incidence of diabetes mellitus (DM) is increasing at alarming proportions worldwide. This necessitates the need to gain deeper insights into the establishment and development of the disease. Amongst the two major forms of DM, type 1 DM (T1DM) is autoimmune and involves the death of pancreatic -cells, while type 2 DM (T2DM) is associated with the development of insulin resistance. The development of murine models for both T1DM and T2DM has helped in elucidating disease mechanisms and in assessing the efficacy of various therapeutic agents. However, a dire need exists to identify early biomarkers for the two. Metabolomics, the study of metabolites the end-products of different biochemical pathways, has emerged as a major tool for the identification of specific and early biomarkers. This study is an attempt in this direction where a relationship between the development of hyperglycemia and metabolic disturbances that occur during the development of type 1 diabetes (T1DM) and type 2 diabetes (T2DM) is being evaluated using established animal models. Methods: Male C57BL/6 mice, aged six weeks, were subjected to streptozotocin (STZ) injections (55 mg/kg) in increasing numbers (0 to 5 injections). Mice were monitored for 15- and 60-day post-injection for T1DM development. For T2DM, eight-week-old male C57BL/6 mice were fed a high-fructose/high-fat diet (HF/HFD), with assessments at 4, 8, 12, and 16 weeks. An oral glucose tolerance test (OGTT) and insulin tolerance test (ITT) were performed to confirm the development of hyperglycemia and insulin resistance. Following these assessments, NMR spectroscopy was performed on the metabolites extracted from the collected adipose tissue samples. Briefly, 1H NMR spectra were recorded using the noesygppr1d pulse program. Metabolite concentrations were calculated for each adipose tissue sample using Chenomx NMR Suite 8.1 software. The normalized metabolite concentrations were analyzed using MetaboAnalyst to determine and identify the significantly perturbed metabolites. Results: Mice receiving three or more STZ injections exhibited significant hyperglycemia at both the early and late time points, indicating that small insults were adequate for inducing diabetic conditions. In the HF/HFD cohort, a progressive increase in insulin resistance and hyperglycemia was observed from 8 weeks onwards. A total of 51 abundant and aqueous metabolites were identified in the adipose tissues, with leucine and lysine emerging as potential early biomarkers for pancreatic β-cell death in T1DM. For T2DM, metabolites such as choline, glycerophosphocholine, and valine showed promise as early biomarkers for establishing hyperglycemia and insulin resistance. The common perturbed metabolic pathways included protein biosynthesis, propanoate metabolism, and valine, leucine, and isoleucine degradation. Conclusion: The metabolic perturbations identified from this study provide insights into the pathophysiology of T1DM and T2DM and suggest specific metabolites that can be proposed as potential early biomarkers for the identification of these conditions. Further exploration of these pathways may enhance understanding of diabetes progression and provide insights for different therapeutic strategies.
Soumya Sahoo PhD Student, Department of Chemistry IISER Pune
Having completed both my graduation and post-graduation at Visva Bharati University, I am now engaged in research focused on NMR-based metabolomics. This specialized field utilizes Nuclear Magnetic Resonance (NMR) spectroscopy to analyze metabolites in biological samples, providing insights into metabolic processes and their implications for health and disease.
Chiral hybrid perovskite films combine optical chirality with semiconducting charge transport properties leading to chiral optoelectronics like circularly polarized photodetectors or LEDs. A key component for such applications is the extent of chirality in the film. Circular dichroism (CD), particularly its anisotropic factor (gCD), is typically used to measure the extent of chirality of the material. In contrast, here we show that the CD and gCD depends strongly on an extrinsic parameter, namely film morpohology. We have prepared single crystals and spin-coated films of six chiral hybrid lead halides, 2D (R- and S-MBA)2PbI4, 1D (R- and S-MBA)PbI3 and 1D (R- and S-MBA)PbBr3, where MBA = methylbenzylammonium. Four samples, 2D (R- and S-MBA)2PbI4 and 1D (R- and S-MBA)PbI3 form homogenous non-textured films, and show isotropic CD signal with reliable gCD values. But other two samples, 1D (R- and S-MBA)PbBr3 form textured films, showing uncorrelated CD signals from different parts of the same film. Therefore, our results show that the role of film morphology needs to be verified, before designing and comparing chiroptic and chiral optoelectronic properties of hybrid perovskites.
Urmila Makhija PhD Student, Department of Chemistry IISER Pune
Graduation: Fergusson College Post Graduation: Institute of Chemical Technology, Mumbai Research Interest: Understanding the structural-property relationship in low dimensional hybrid perovskites in terms of chirality, piezoelectricity and thermosalient properties.
Eosin-Y catalyzed synthesis of diverse arrays of bioactive tetraketones using cyclic-1,3-diketones and tertiary amines as alkyl synthon under 18W blue LED have been accomplished. Diverse arrays of tertiary amines first undergo reductive quenching of excited photo catalyst to form iminium ion that upon subsequent attack by cyclic-1,3-diketones give rise to tetraketones. The tetraketones were cyclised further using I2/K2CO3 to afford spirocyclic products.
Shankhajit Mondal PhD Student, Department of Chemistry IISER Pune
BSc chemistry hons. from Krishnath college, Berhampore, MS in chemistry from IISER Pune, Research interest in photochemical transformations, homogenous and heterogeneous catalysis
Two-dimensional (2D) chiral organic-inorganic hybrid lead halide perovskites combines structural asymmetry, semiconducting charge transport and strong spin-orbit coupling paving the way for unique chiral optoelectronic and spin-based properties. Typically, chiral organic sublattice induces chirality into the inorganic sublattice through non-covalent interactions at organic-inorganic interface. However, the specific mechanisms driving this chirality induction remain unclear. In a novel approach, we propose using different conformers of a chiral organic ammonium ion to create asymmetry in these non-covalent interactions, thereby tailoring the chirality of the inorganic sublattice. We prepared (R-IAP)2PbI4 and (S-IAP)2PbI4 (IAP: 1-iodopropane-2-ammonium), which crystallize in the helical enantiomorphic space groups P43212 and P41212, respectively. Structural analysis shows that the gauche- and anti-conformers of IAP are arranged alternatively in the hybrid structure. Importantly, the anti-conformer of IAP ion have significantly stronger electrostatic, hydrogen bonding, and I-I halogen bonding interactions with the inorganic [PbI4] sublattice, compared to the gauche-conformer. This periodic asymmetry in non-covalent interactions caused by the alternative arrangement of gauche- and anti-conformers, induces chirality within the inorganic sublattice lattice, marked by rare four-fold screw axes (4₃ and 4₁). The two chiral enantiomers (R-/S-IAP)2PbI4 show mirror-image like circular dichroism spectra for excitonic absorption, which originates mainly from the inorganic sublattice. This conformer-mediated approach to design chiral hybrid perovskites in helical space groups expands the materials options for advanced optoelectronics.
Taniya Dutta PhD Student, Department of Chemistry IISER Pune
Graduation- Calcutta University Post graduation- Jadavpur University Research interest- Synthesis and photo-physic investigation of 2D hybrid perovskite
Abstract: The chemistry of heterocyclic compounds holds a significant role in modern organic and medicinal chemistry. These heterocyclic compounds serve as key structural frameworks in various biologically active compounds. Moreover, 2H-chromene derivatives with oxygen-containing heterocycles exhibit a range of pharmacological effects. 2H-chromenes serve as precursors for creating various therapeutic agents, such as anti-HIV, antidiabetic, anticancer, antihypertensive, antioxidative, and antiviral. Additionally, they are utilized in the development of antitumor, antimicrobial, fungicidal, insecticidal, and cytotoxic substances, and play a key role as intermediates in the synthesis of many natural products and pharmaceuticals. The synthesis of 2H-chromene derivatives typically involves the condensation of phenols with α, β-unsaturated carbonyl compounds, such as aldehydes or ketones. One common method is the use of pechmann condensation, where a phenolic compound reacts with a β-ketoester in the presence of an acid catalyst, leading to the formation of chromene molecule. Herein, we developed a new approach for the synthesis of novel chromene derivatives via trans-annulation of 4-hydroxy coumarins using 2-hydroxy or amino-substituted benzyl alcohols in the presence of most abundant Mn (III) catalyst. The process typically involves dual C-H alkylation followed by ring opening and annulation to access chroman or chromeno-quinoline derivatives. The mechanistic investigation was done with
Gokul S Londhe PhD Student, Department of Chemistry IISER Pune
I have completed an M.Sc. in Chemistry from Shivaji University, Kolhapur, and a B.Sc. from Shri Shivaji Mahavidyalaya, Barshi. I am currently engaged in research centered on batch and continuous flow organic transformations for the synthesis of new bioactive molecules.
Shorter 10- and 12-mer peptides exhibited only minimal aggregation inhibition, while the fully hydrophobic 15-mer analogue of the ααγ-hybrid peptide showed no aggregation inhibitory activity. In contrast, the 18- and 21-mer analogues demonstrated excellent inhibition compared to the 15-mer. Additionally, ααγ-hybrid peptide demonstrated resistance to trypsin digestion and proved nontoxic to neuronal cells. Circular dichroism analysis revealed that the peptide induces a helical conformation in Aβ42 upon interaction, which is a significant departure from the typical β-sheet conformation associated with Aβ42 aggregation. With increasing the length of the peptide enhances its ability to disrupt Aβ42 aggregation while maintaining non-toxicity to cells and exhibiting non-hemolytic properties.
Sandip Toraskar PhD Student, Department of Chemistry IISER Pune
Graduation- SGM Collage Karad, Post Graduation- YCIS Satara, Research Interest- Peptide
Heparin is a widely used anticoagulant in clinical settings, but its overuse or accidental overdose can lead to serious bleeding complications. Protamine sulfate has long served as the standard antidote; however, its potential for adverse effects such as anaphylaxis and thrombocytopenia has prompted the search for safer, more efficient alternatives. In this study, we report the discovery of guanidine-based heparan sulfate mimetics as novel antidotes for heparin. Guanidine's strong basicity and capacity for electrostatic interactions allow it to effectively bind to heparin's negatively charged sulfate groups, neutralizing its anticoagulant properties. By using structure-guided design, we synthesized and evaluated a series of guanidine HS trisaccharides for their heparin-binding affinity and neutralization capacity. In vitro assays demonstrated that guanidine compounds could rapidly neutralize various forms of heparin. The binding mechanism was confirmed through NMR, which revealed strong electrostatic and hydrogen-bonding interactions between guanidine groups and heparin's sulfate chains. These findings suggest that guanidine HS represent a promising new class of heparin antidotes with potential advantages over protamine in terms of safety, efficacy, and specificity. Further in vivo studies are warranted to explore their therapeutic applications and pharmacological profiles.
Ankita Chandra PhD Student, Department of Chemistry IISER Pune
The chemistry of the stable divalent Group 14 elements, called Tetrylene, has been the subject of extensive discussion and investigation for the past several decades. Tetrylenes, being the heavier analouge of carbene, have one lone pair of electrons and one vacant p orbital, hence, they require inter/intramolecular donation to provide thermodynamic stabilization.1 There are a lot of reports on the synthetic design and reactivity of low valent Germanium ( Germylene) and Tin ( Stannylene). Here, we designed a phosphine-stabilized Germylene and Stannylene in the Acenaphthene backbone. Interestingly, the electron push from the adjacent peri-substituted Phosphorous atom to the vacant p orbital of germylene and stannylene led to different kinds of bond activations5 at the germylene center based on the donating ability of the Phosphine, rendering the oxidation of the Germanium center from +2 to +4 oxidation state. However, when we placed a Germanium (II) cation6 adjacent to the Germylene, the electron push from the phosphine and simultaneous electron pull from the Ge (II) cation stabilized the Germylene via push-pull interaction. In other work, we investigated the coordination of Gold(I) chloride with a PNNP pincer ligand provided promising results with the synthesis of a monometallic and a bimetallic complex. The monometallic complex provided an open coordination site which was further exploited for the coordination of low-valent germanium. However, that led to the formation of an unprecedented Germanium (II) Gold (I) bimetallic complex.
Rahul Deb PhD Student, Department of Chemistry IISER Pune
The novel reactivity of a less selective and more reactive acceptor-acceptor kind of diazo pyrazolone (DIPOL) has been explored under visible light for the first time. We have successfully demonstrated the reaction of DIPOL and different allyl thioethers under blue light to construct a wide variety of products including a pesticidal analogue exclusively in excellent chemoselectivity in good to excellent yields. Moreover, possible side products emanating from ketene were not observed. This protocol works smoothly in an environmentally benign solvent under inert free conditions. The practicality of the protocol has been extended to a photoflow reaction, and also, the reaction works smoothly under the direct exposure of sunlight.
Onkar Bankar PhD Student, Department of Chemistry IISER Pune
Hepatocyte growth factor (HGF) is a natural protein that binds to its high-affinity receptor, mesenchymal-epithelial transition factor (c-Met) which then activates several downstream cellular signaling such as tissue regeneration, growth and protection. overexpression of c-Met shows cancer metastasis. A DNA aptamer trcln3 is known to bind to c-Met target-specifically and inhibit HGF-induced c-Met signaling. Our hypothesis is to conjugate the aptamer to a probe leveraging click chemistry. The modified aptamer attaches to the cell membrane by receptor binding and via receptor-mediated endocytosis internalizes the probe attached at the 3’-end of the aptamer. This modified aptamer can be used as a tool for cellular imaging as well as a targeted drug delivery platform.
Swagata Dutta PhD Student, Department of Chemistry IISER Pune
I completed my graduation from SGTB Khalsa College from University of Delhi in 2018. I joined iPhD program in IISER pune in 2019. I am currently working in drug design and protein design for specific protein targets.
Gankyrin is an oncogenic protein overexpressed in cancers, notably hepatocellular carcinoma, and plays a key role in cell cycle dysregulation and tumorigenesis. It exerts its effects by binding to various protein partners, including retinoblastoma protein (pRb) and HDM2, enhancing the hyperphosphorylation and degradation of pRb and promoting p53 ubiquitination. These interactions activate pathways that favor cell proliferation and suppress apoptosis, making gankyrin a significant target for cancer therapeutics. However, gankyrin's flat, concave surface presents challenges for small-molecule targeting, suggesting the potential of peptide binders as effective inhibitors. In this work, we utilized advanced diffusion models, specifically RFdiffusion, to design peptide backbones capable of binding to gankyrin’s interaction interfaces. RFdiffusion incrementally denoises input data to generate structures that resemble target distributions. We paired RFdiffusion with ProteinMPNN, a graph neural network-based tool, to obtain optimized amino acid sequences for generated peptide backbones. Predicted structures for these peptides were refined using AlphaFold2, ensuring structural consistency and biological feasibility. To evaluate binding affinity, we performed free energy calculations through metadynamics, quantifying the binding free energies of top-ranking peptides.
Rahul Hooda PhD Student, Department of Chemistry IISER Pune
Graduation - Jadavpur University (2014-2017) Post graduation - Jadavpur University (2017-2019) Research Interests - Labeling of nucleic acids by conjugating therapeutically relevant probes using click chemistry
Our group have been interested in low-valent Sn(II) chemistry stabilized within bis(imine) based redox-active ligand systems. We have obtained a bisstannylene from the reaction between the bis(-iminopyridine) ligand and the Sn[(NSiMe3)2]2 through ene-amide transformation.Such ene-amide stabilized stannylene exhibit dipolar behavior leading to the formation of Sn(II) di-cation. The ene-amide derivative has been utilized for the stabilization of a highly nucleophilic stannylene. We have now observed C-C coupling reactions in the ene-amide stabilized polystannylene systems via radical pathway. The C-C coupling occurs at the ligand backbone of the polystannylenes leading to the formation of intensely colored compounds. The compounds have been fully characterized using single crystal X-ray diffraction techniques in the solid-state and multi-nuclear NMR spectroscopy in the solution-state. The origin of the absorbance for such polystannylenes have been rationalized from time-dependent density functional theory of their optimized geometries. We have isolated intermediates which helps to rationalize the reaction mechanism for the coupling reaction. All these studies will be discussed in the talk.
Niranjan Patel PhD Student, Department of Chemistry IISER Pune
Mr. Niranjan Patel obtained his BSc degree from V.P Sci. College of Sardar Patel University in 2017 and completed MSc from Chemistry Dept. of Sardar Patel University in 2019 Currently, he is working as a doctoral student under the supervision of Dr. Moumita Majumdar at Indian Institute of Science Education and Research(IISER), Pune. His research area of interest is synthesis of bimetallic maingroup compounds and explore thier cooperative activity.
Prion proteins (PrPs) are implicated in a range of neurodegenerative diseases, and understanding their dynamic behavior is crucial for unraveling the mechanisms underlying prion pathology. In this study, we use Photoinduced Electron Transfer Fluorescence Correlation Spectroscopy (PET-FCS) to investigate the dynamics of prion proteins, focusing on how pathogenic mutations influence the protein's native state. PET-FCS provides high-resolution insights into protein conformational transitions by monitoring fluorescence fluctuations and utilizing photoinduced electron transfer to track molecular interactions. By comparing the dynamics of wild-type and mutant prion proteins, we examine how specific pathogenic mutations alter the protein's conformational stability and native state dynamics. Our results show that these mutations disrupt the native conformational equilibrium, affecting protein flexibility and potentially facilitating misfolding and aggregation. These findings offer new perspectives on how genetic variations in prion proteins may contribute to disease progression and provide a deeper understanding of the relationship between protein dynamics and prion-related neurodegenerative disorders.
Preeti Kumari PhD Student, Department of Chemistry IISER Pune
Research interest: Physical Biochemistry Post graduation: NIT Calicut Graduation: Forbesganj College
Plasmonic nanomaterials of Au, Ag, Cu, and Al have emerged as an important class of photocatalysts because of their exceptionally high light absorption capabilities, which enable them to carry out challenging chemical transformations. However, their low chemical affinity towards most of the reactant molecules presents fundamental limitations such as low yield and selectivity in sole plasmonic photocatalysis.3 In recent years, researchers have developed strategies to enhance the charge separation and extraction processes by modulating the catalyst-reactant interaction and designing plasmonic antenna-reactor systems. In an antenna-reactor system, a plasmonic component concentrates the light energy, and an attached non-plasmonic component extracts this energy to generate hot charge carriers to carry out chemical transformations.1 In this direction, our group has prepared antenna-reactor systems comprising gold-rhodium constructs (AuNP-Rh NFs and AuNR-Rh SSs) and precisely modified the surface chemistry to study the effect of shape anisotropy in carrying out the photocatalytic regeneration of nicotinamide cofactor (NAD(P)H). NAD(P)H is an essential cofactor used by oxidoreductase enzymes in various biocatalytic reactions, and its regeneration using light is an important area in biocatalysis. Functionalized AuNR-Rh SSs showed better photocatalytic activity compared to AuNP-Rh NFs as well as sole plasmonic photocatalysts towards the regeneration of NADH, which was attributed to the (i) enhanced catalyst-mediator interaction, (ii) antenna-reactor effect, and (iii) shape anisotropy. The photocatalytic performance was retained for at least five cycles, establishing Au-Rh constructs as a promising antenna-reactor system for future photocatalytic NAD(P)H regeneration.
Ankit Dhankhar PhD Student, Department of Chemistry IISER Pune
Graduation- Atma Ram Sanatan Dharma College, University of Delhi Post Graduation- IIT Guwahati Research- Synthesis and photocatalytic applications of plasmonic antenna-reactor constructs
In this work, we have investigated the crucial role of ligand in non-precious organometallic complexes in influencing the de-electronation kinetics of fuel molecules through a unique substrate-ligand synergistic interaction. This unique chemistry imparts electron deficiency at the catalytic metal center while simultaneously populating the ligand with an extensive proton charge assembly. This distinct substrate-ligand interaction enhances the DLFC (Direct liquid fuel cell) performance by coulombically dragging the substrate with a distinct amplification in its de-electronation kinetics. By integrating this approach with an outer-sphere half-cell reaction, a precious metal-free vitamin C fuel cell is developed, which is capable of generating an open circuit voltage of 950 mV, a peak power density of 97 mW/cm2 at a peak current density of 215 mA/cm2 with the performance metrics nearly 1.7 times higher than a precious metal based DLFC. This work contributes to the potential of substrate-ligand synergy in designing efficient molecular catalysts for energy conversion applications.
Muskan Parmar PhD Student, Department of Chemistry IISER Pune
Graduation :- Institute of Science, BHU Post Graduation:- Institute of Science, BHU Research Interest:- Electrocatalysis, fuel cell
Extraction of gold from secondary resources such as electronic waste (e-waste) has become crucial in recent times to compensate for the gradual scarcity of the noble metal in natural mines. However, designing and synthesizing a suitable material for highly efficient gold recovery is still a great challenge. Herein, we have strategically designed rapid fabrication of an ionic crystalline hybrid aerogel by covalent threading of an amino-functionalized metal-organic polyhedra with an imine-linked chemically stable covalent organic framework at ambient condition. The hierarchically porous ultra-light aerogel featuring imine-rich backbone, high surface area, and cationic sites have shown fast removal, high uptake capacity (2349 mg/g), and excellent selectivity towards gold sequestration. Besides, the aerogel can extract ultra-trace gold-ions from different terrestrial water bodies, aiming towards safe drinking water. This study demonstrates the great potential of the composite materials based on a novel approach to designing a hybrid porous material for efficient gold recovery from complex water matrices.
Dipanjan Majumder PhD Student, Department of Chemistry IISER Pune
Graduation-2018 Calcutta University, Post graduation-2020 IIT Guwahati, PhD- 2020-present Advanced Functional Porous materials
Ultramicroporous metal-organic frameworks (MOFs) are uniquely suited for CO2 capture due to their ability to tightly pack active functional groups within their pores, enhancing selective guest–framework interactions. MOFs with pore surfaces lined with both methyl and amine groups are especially promising for efficient CO₂ sorption under humid conditions. In this study, a zinc-triazolato-acetate layered-pillared MOF demonstrates the potential of such functionalized ultramicropores, showcasing selective CO₂ capture capabilities. These findings emphasize the role of precisely engineered pore environments in developing next-generation materials for effective and selective CO₂ adsorption in challenging conditions.
Piyush Singh PhD Student, Department of Chemistry IISER Pune
I completed a BSc in Chemistry from VPSPU University Jaunpur and an MSc in Chemistry from IIT Jodhpur. My research interests focus on Material Science, specifically on designing and synthesizing novel Metal-Organic Frameworks (MOFs) that are suitable for CO₂ capture applications.
This study investigates a novel electro-synthetic method for ammonia production directly from agricultural digestate, leveraging ligand isomerization to enhance catalytic efficiency. Conventional ammonia synthesis, typically achieved via the Haber-Bosch process, is energy-intensive and relies on fossil fuels, resulting in high carbon emissions along with high energy consumption. By contrast, this process operates under ambient conditions with a custom catalyst that undergoes ligand isomerization, achieving approximately 90% conversion efficiency and a yield of ~0.64 mg of NH₃ per hour per cm². Agricultural digestate serves as a nitrogen-rich, renewable feedstock, aligning this method with sustainable waste utilization practices and circular economy principles. The selective activation of catalytic sites ensures consistent yield while minimizing energy input, offering economic and environmental benefits suitable for decentralized applications in agricultural sectors. However, challenges remain regarding catalyst stability and scalability due to variability in digestate composition. Future work will focus on enhancing catalyst durability, optimizing operational parameters, and adapting to diverse waste inputs to ensure viable large-scale implementation. This approach offers an efficient, low-emission pathway for ammonia production, potentially transforming waste management in agriculture. In summary, this ammonia electrosynthesis method offers a promising alternative to traditional production, transforming agricultural waste into valuable resources while contributing to cleaner, circular economy models and sustainable agriculture. This innovation has the potential to revolutionize the ammonia industry, offering economic and environmental benefits on a global scale.
Rahul Mendhe PhD Student, Department of Chemistry IISER Pune
Fergusson College Pune, Savitribai Phule Pune University, Pune Dept of Chemistry, Savitribai Phule Pune University, Pune Electrocatalysis
DNA polymerase-catalysed incorporation of modified nucleotides is employed in many biotechnological applications, such as next-generation sequencing, nucleic acid-based diagnostics, SELEX etc. Researchers have developed various modified nucleotides with reactive handles that are well accepted by DNA polymerases for deploying functional tags through post-synthetic DNA functionalization using biorthogonal chemistry. In this context, the widespread applications of click chemistry based post-synthetic DNA modification have been extensively employed for purposes such as visualization, imaging, and tagging etc. Azide modified nucleotides are important class of compounds utilized extensively for modifying DNA using copper catalysed and strain promoted click chemistry (CuAAC & SPAAC) for aforementioned application. In this context, we report a class of azide modified nucleotide analogs (dN*TPs) having different chain length modified at the C5 position of thymidine have been well accepted by family A (KlenTaq) and family B (Kod) DNA polymerases in PEX. Using these modifications we have also developed site specific DNA labeling technique for post synthetic click chemistry. Moreover, crystal structure of azide modified nucleotide bound to KlenTaq DNA polymerase and a primer•template complex provides insights into the incorporation of modified nucleotide analogs within the enzymatic cavity and reveals the interactions between the modified nucleotide and the amino acid residues.
Arindam Pal PhD Student, Department of Chemistry IISER Pune
B.Sc- Rmakrishna Mission Vidyamandira, Int PhD- IISER Pune